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Quinlan template

  • Start
    • Wie is ...?
  • Electronics
    • PICkit2 in Proton+
    • Arduino Cursus
      • ABC-Gids code
      • Arduino als programmer
      • Arduino bibliotheken
    • Boeken en handleidingen
      • ESP8266 nodemcu
      • Theorie
      • Raspberry Pi model B+
        • Contact met de buitenwereld
    • Webwinkels
    • Software electronica
    • Software downloads
    • LED-weerstand
    • Elektor
    • Printplaten maken
      • Soldeermasker aanbrengen
      • Belichtingstest
      • Viewlayout gebruiken
      • SMD solderen
    • Data-bladen
    • Raspberry Pi
      • Connecties
      • Videolessen
    • PIC microcontrollers
  • Projecten
    • PICkit2
    • GalvaWisp
    • DCF77 klok
      • DCF77-7seq
    • Christmas Star
    • Octa-LEDs
    • Snowflake
    • 5x5x5 Kubus
    • Simon says
    • Timer 220V
    • Rheinturm Uhr
      • Download Rheinturm
    • Ultrasone afstandsmeter
      • Download Ultrasoon
    • Klok via NTP met ESP8266
      • ESP8266 nodemcu
    • Rheinturm met LED-strip
    • WordClock RGB-strip
      • Download WordClock
    • Klok met gekleurde rand
  • Talen
    • Chinese les
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      • Zoek en schrijf
      • Karakters
    • Noors
      • Grammatikk
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      • Grammatica - ww
      • Grammatica 2
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      • Arduino Youtube
      • Electronica in praktijk
    • Youtube
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      • Galleria mellonella
      • DNA van FFPE tissue
      • Hemacytometer
      • Opslag chemicaliĆ«n
      • Chelex DNA from Anopheles
      • Software
      • Werk in uitvoering
      • Events
    • Phylogenetische bomen
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      • Online conversie
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    • Sequenties naar Genbank
      • Nieuwe Genbank upload
    • Protocollen
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      • Training positive
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    • Woordenboek van de hond
    • Een nieuw puppy
    • Clicker training
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Pagina 1 van 9

Introduction

This course is meant to work with different kinds of alignment programs and tree contruction software.
There is a lot of available software out there, free and paid, but also web portals to do the job.

Web portals, however, are often limited to the size of the data to prevent users uploading gigabytes of data.
Your computer, depending on the physics like cpu, available RAM etc. makes it possible to handle large data sets.

PhyloMain v6, that is available via this website, is using freely available software to do the job.

Much more software on this topic is available on the internet and this website.

 

 



Updated version: 2022-08-20

PhyloMain v6.3 + Programs

If you already downloaded the package then use the next download to update the PhyloMain program:

PhyloMain v6.3 Update
 

Create a folder .e.g. D:\PhyloMain. Move the zip file into this folder and unzip the file here. A folder PhyloMain is created that contains the starting program and the subfolders Examples, Manual and Progs.
Move the subfolder Progs to C:\Users\Public (in Dutch: C:\Gebruikers\Openbaar).

In D:\PhyloMain start the program by double-clicking PhyloMain.exe; there is a newer version available down at this webpage. It offers some benefits.

When everything is correct, you will see this window appearing on your monitor.

 

Comments and questions can be addressed via contact form.

Assign programs, that are used in PhyloMain

In case you didn't move the 'Progs' folder to C:\Users\Public, you have to assign every single program to the new directory.

E.g. if the 'Progs' folder is still in the installation folder then 'progsdir' should become D:\PhyloMain\Progs

Double-click on the specific program and choose the right folder and program; some are .exe files, others .bat
Look at the examples in the window:

bioedit = C:\Users\Public\Progs\BioEdit\BioEdit.exe and should be changed into D:\PhyloMain\Progs\BioEdit\BioEdit.exe
mafft = C:\Users\Public\Progs\mafft-win\mafft.bat should be changed into D:\PhyloMain\Progs\mafft-win\mafft.bat
and so on.

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